Homology Modelling and Structural Insights into PTEN Interaction with Plant - Bioactives

  • Unique Paper ID: 185482
  • Volume: 12
  • Issue: 5
  • PageNo: 1452-1468
  • Abstract:
  • Phosphatase and Tensin Homolog (PTEN) is a critical tumour suppressor protein frequently inactivated in human cancers. The absence of a complete experimental structure for full-length PTEN limits drug discovery efforts. This study employed homology modelling to construct a reliable three-dimensional (3D) model of PTEN using SWISS-MODEL. The model was validated through Ramachandran plot analysis (97.4% residues in favoured/allowed regions), ERRAT (overall quality factor 92.9%), and Verify3D, confirming high stereochemical quality. Molecular docking studies using Auto Dock Vina were performed to evaluate the binding potential of four plant-derived bioactive compounds—Curcumin, Resveratrol, Berberine, and Quercetin—with the PTEN model. All compounds exhibited favourable binding affinities. Berberine and Quercetin showed the strongest interactions, with binding energies of -7.6 kcal/mol, indicating stable complex formation. The results suggest these natural compounds, particularly Berberine and Quercetin, could act as potential modulators of PTEN activity, offering a computational foundation for developing plant-based therapeutics against PTEN-deficient cancers.

Copyright & License

Copyright © 2025 Authors retain the copyright of this article. This article is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

BibTeX

@article{185482,
        author = {Vaishnavi S Chainpuria and Snehal R Kamble and Kalpana Dabhade},
        title = {Homology Modelling and Structural Insights into PTEN Interaction with Plant - Bioactives},
        journal = {International Journal of Innovative Research in Technology},
        year = {2025},
        volume = {12},
        number = {5},
        pages = {1452-1468},
        issn = {2349-6002},
        url = {https://ijirt.org/article?manuscript=185482},
        abstract = {Phosphatase and Tensin Homolog (PTEN) is a critical tumour suppressor protein frequently inactivated in human cancers. The absence of a complete experimental structure for full-length PTEN limits drug discovery efforts. This study employed homology modelling to construct a reliable three-dimensional (3D) model of PTEN using SWISS-MODEL. The model was validated through Ramachandran plot analysis (97.4% residues in favoured/allowed regions), ERRAT (overall quality factor 92.9%), and Verify3D, confirming high stereochemical quality. Molecular docking studies using Auto Dock Vina were performed to evaluate the binding potential of four plant-derived bioactive compounds—Curcumin, Resveratrol, Berberine, and Quercetin—with the PTEN model. All compounds exhibited favourable binding affinities. Berberine and Quercetin showed the strongest interactions, with binding energies of -7.6 kcal/mol, indicating stable complex formation. The results suggest these natural compounds, particularly Berberine and Quercetin, could act as potential modulators of PTEN activity, offering a computational foundation for developing plant-based therapeutics against PTEN-deficient cancers.},
        keywords = {Cancer therapeutics, homology modelling, molecular docking, PTEN, phytochemicals.},
        month = {October},
        }

Cite This Article

  • ISSN: 2349-6002
  • Volume: 12
  • Issue: 5
  • PageNo: 1452-1468

Homology Modelling and Structural Insights into PTEN Interaction with Plant - Bioactives

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